Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs66977371 chr6:131709250 TA/T 2.34E-5 176 24.85 27.27 17.4 KM Plot
PCPG rs66982778 chr16:1744736 G/A 0 175 25.6 18.75 2.93 KM Plot
PCPG rs6708380 chr2:24341312 T/C 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs6708688 chr2:24356476 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs6709140 chr2:118553400 T/A 1.89E-5 176 25.17 25.97 11.65 KM Plot
PCPG rs6709860 chr2:242549624 A/G 4.95E-5 176 25.2 29.95 19.75 KM Plot
PCPG rs67102443 chr2:239084602 A/G 2.93E-5 177 33.32 20.2 19.28 KM Plot
PCPG rs6710667 chr2:24339554 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs6711928 chr2:191470188 C/T 0.000458 176 25.87 24.23 27.18 KM Plot
PCPG rs67130283 chr13:114167707 CAG/C 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs6714449 chr2:242547302 G/A 3.06E-5 176 25.87 26.62 20.28 KM Plot
PCPG rs6714623 chr2:24292735 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs6714743 chr2:24292813 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs6714810 chr2:242547542 G/T 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs6716070 chr2:136544651 G/T 2.26E-5 178 9.72 24.98 25.77 KM Plot